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CGO: utilizing and integrating gene expression microarray data in clinical research and data management.

Klaus Bumm·Mingzhong Zheng·Clyde Bailey·Fenghuang Zhan·M Chiriva-Internati·Paul Eddlemon·Julian Terry·Bart Barlogie·John D Shaughnessy
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Abstract

Clinical GeneOrganizer (CGO) is a novel windows-based archiving, organization and data mining software for the integration of gene expression profiling in clinical medicine. The program implements various user-friendly tools and extracts data for further statistical analysis. This software was written for Affymetrix GeneChip *.txt files, but can also be used for any other microarray-derived data. The MS-SQL server version acts as a data mart and links microarray data with clinical parameters of any other existing database and therefore represents a valuable tool for combining gene expression analysis and clinical disease characteristics.

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Computational BiologyDatabase Management SystemsGene Expression ProfilingHumansOligonucleotide Array Sequence AnalysisSoftwareJournal ArticleResearch Support, Non-U.S. Gov'tResearch Support, U.S. Gov't, P.H.S.

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Klaus Bumm, Mingzhong Zheng, Clyde Bailey, Fenghuang Zhan, M Chiriva-Internati, Paul Eddlemon, Julian Terry, Bart Barlogie, John D Shaughnessy. 2002. CGO: utilizing and integrating gene expression microarray data in clinical research and data management.. https://doi.org/10.1093/bioinformatics%2F18.2.327

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