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TFBS: Computational framework for transcription factor binding site analysis.

Boris Lenhard·Wyeth W Wasserman
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Abstract

MOTIVATION: TFBS is a set of integrated, object-oriented Perl modules for transcription factor binding site detection and analysis. It implements objects representing specificity profile matrices, binding sites and sets thereof, pattern generators, and pattern database interfaces. The modules are interoperable with the BioPerl open source system. AVAILABILITY AND SUPPLEMENTARY INFORMATION: The module package with documentation and example scripts are available at http://forkhead.cgb.ki.se/TFBS/

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Binding SitesDNADatabases, Nucleic AcidInternetPattern Recognition, AutomatedProgramming LanguagesRegulatory Sequences, Nucleic AcidSequence Analysis, DNASoftwareTranscription FactorsTranscription, GeneticJournal Article

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Boris Lenhard, Wyeth W Wasserman. 2002. TFBS: Computational framework for transcription factor binding site analysis.. https://doi.org/10.1093/bioinformatics%2F18.8.1135

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