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CLUSFAVOR 5.0: hierarchical cluster and principal-component analysis of microarray-based transcriptional profiles.

Leif E Peterson
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Abstract

CLUSFAVOR (CLUSter and Factor Analysis with Varimax Orthogonal Rotation) 5.0 standardizes input data; sorts data according to gene-specific coefficient of variation, standard deviation, average and total expression, and Shannon entropy; performs hierarchical cluster analysis using nearest-neighbor, unweighted pair-group method using arithmetic averages (UPGMA), or furthest-neighbor joining methods, and Euclidean, correlation, or jack-knife distances; and performs principal-component analysis.

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AnimalsCluster AnalysisData Interpretation, StatisticalGene Expression ProfilingOligonucleotide Array Sequence AnalysisPrincipal Component AnalysisSoftwareTranscription, GeneticJournal ArticleResearch Support, U.S. Gov't, P.H.S.

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BibTeXRIS

Leif E Peterson. 2002-06-24. CLUSFAVOR 5.0: hierarchical cluster and principal-component analysis of microarray-based transcriptional profiles.. https://doi.org/10.1186/gb-2002-3-7-software0002

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