Integrating computationally assembled mouse transcript sequences with the Mouse Genome Informatics (MGI) database.

Yunxia Zhu; Benjamin L King; Babak Parvizi; Brian P Brunk; Christian J Stoeckert; John Quackenbush; Joel Richardson; Carol J Bult

doi:10.1186/gb-2003-4-2-r16

PubMed · 12620126

Integrating computationally assembled mouse transcript sequences with the Mouse Genome Informatics (MGI) database.

Yunxia Zhu·Benjamin L King·Babak Parvizi·Brian P Brunk·Christian J Stoeckert·John Quackenbush·Joel Richardson·Carol J Bult

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Abstract

Databases of experimentally generated and computationally derived transcript sequences are valuable resources for genome analysis and annotation. The utility of such databases is enhanced when the sequences they contain are integrated with such biological information as genomic location, gene function, gene expression and phenotypic variation. We present the analysis and results of a semi-automated process of connecting transcript assemblies with highly curated biological information for mouse genes that is available through the Mouse Genome Informatics (MGI) database.

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Animals Computational Biology Databases, Nucleic Acid Genome Mice Transcription, Genetic Comparative Study Journal Article Research Support, U.S. Gov't, Non-P.H.S.Research Support, U.S. Gov't, P.H.S.

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Yunxia Zhu, Benjamin L King, Babak Parvizi, Brian P Brunk, Christian J Stoeckert, John Quackenbush, Joel Richardson, Carol J Bult. 2003-02-03. Integrating computationally assembled mouse transcript sequences with the Mouse Genome Informatics (MGI) database.. https://doi.org/10.1186/gb-2003-4-2-r16

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