Patterns of context-dependent codon biases.

Anders Fuglsang

doi:10.1016/s0006-291x(03)00530-8

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Patterns of context-dependent codon biases.

Anders Fuglsang

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Abstract

The association of codon context and codon usage was studied in seven bacteria as well as Schizosaccharomyces pombe and Encephalitozoon cuniculi. The association is strongest in magnitude closest to the codons of interest but there is apparently no rule about which of the two contexts is generally strongest associated to codon usage. In all bacterial species and in the intron-rich Sch. pombe it was furthermore observed from plots of chi2 versus N that the wobble positions of codons in the proximity cause regular peaks both upstream and downstream. This observation is discussed in relation to a possible effect of mutational pressure on the association of codon usage and codon context. Absence of peaks corresponding to the wobble positions in the intron-poor En. cuniculi, and presence in Sch. pombe, may indicate that the role of introns in the context-dependent codon bias is negligible.

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Animals Bacteria Codon Codon, Initiator Codon, Terminator Encephalitozoon cuniculi Introns Mutation Schizosaccharomyces Journal Article

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Anders Fuglsang. 2003-04-25. Patterns of context-dependent codon biases.. https://doi.org/10.1016/s0006-291x(03)00530-8

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