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Visual representation of database search results: the RHIMS Plot.

David M A Martin·Pamela Hill·Geoffrey J Barton·Andrew J Flavell
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Abstract

SUMMARY: An algorithm and software are described that provide a fast method to produce a novel, function-oriented visualization of the results of a sequence database search. Text mining of sequence annotations allows position specific plots of potential functional similarity to be compared in a simple compact representation. AVAILABILITY: The application can be accessed via a web server at http://www.compbio.dundee.ac.uk. The RHIMS software may be obtained by request to the authors.

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AlgorithmsComputer GraphicsDatabase Management SystemsDatabases, Nucleic AcidGene Expression ProfilingGene Expression Regulation, PlantInformation Storage and RetrievalSequence AlignmentSequence Analysis, DNASequence HomologySoftwareUser-Computer InterfaceVicia sativaComparative StudyEvaluation StudyJournal ArticleResearch Support, Non-U.S. Gov'tValidation Study

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David M A Martin, Pamela Hill, Geoffrey J Barton, Andrew J Flavell. 2003-05-22. Visual representation of database search results: the RHIMS Plot.. https://doi.org/10.1093/bioinformatics%2Fbtg116

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