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POAVIZ: a Partial order multiple sequence alignment visualizer.

Catherine Grasso·Michael Quist·Kevin Ke·Christopher Lee
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Abstract

SUMMARY: POAVIZ creates a visualization of a multiple sequence alignment that makes clear the overall structure of how sequences match and diverge in the alignment. POAVIZ can construct visualizations from any multiple sequence alignment source (e.g. PIR and CLUSTAL formats), and is valuable for revealing complex branching structure (such as domains, large-scale insertions / deletions or recombinations), especially in partnership with the Partial Order Alignment (POA) multiple sequence alignment program. AVAILABILITY: The Partial Order multiple sequence Alignment Visualizer (POAVIZ) program is available at http://www.bioinformatics.ucla.edu/poa

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AlgorithmsGene Expression ProfilingProtein Structure, TertiaryProteinsSequence AlignmentSequence Analysis, ProteinSequence HomologySoftwareUser-Computer InterfaceEvaluation StudyJournal ArticleResearch Support, U.S. Gov't, Non-P.H.S.Validation Study

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BibTeXRIS

Catherine Grasso, Michael Quist, Kevin Ke, Christopher Lee. 2003-07-22. POAVIZ: a Partial order multiple sequence alignment visualizer.. https://doi.org/10.1093/bioinformatics%2Fbtg175

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