ClustalW-MPI: ClustalW analysis using distributed and parallel computing.

Kuo-Bin Li

doi:10.1093/bioinformatics/btg192

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ClustalW-MPI: ClustalW analysis using distributed and parallel computing.

Kuo-Bin Li

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Abstract

ClustalW is a tool for aligning multiple protein or nucleotide sequences. The alignment is achieved via three steps: pairwise alignment, guide-tree generation and progressive alignment. ClustalW-MPI is a distributed and parallel implementation of ClustalW. All three steps have been parallelized to reduce the execution time. The software uses a message-passing library called MPI (Message Passing Interface) and runs on distributed workstation clusters as well as on traditional parallel computers.

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Amino Acid Sequence Base Sequence Cluster Analysis Computing Methodologies Gene Expression Profiling Molecular Sequence Data Sequence Alignment Sequence Analysis, DNA Sequence Analysis, Protein Sequence Homology, Amino Acid Sequence Homology, Nucleic Acid Software Evaluation Study Journal Article Research Support, Non-U.S. Gov't

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Kuo-Bin Li. 2003-08-12. ClustalW-MPI: ClustalW analysis using distributed and parallel computing.. https://doi.org/10.1093/bioinformatics%2Fbtg192

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