AnaGram: protein function assignment.

A J Pérez; G Thode; O Trelles

doi:10.1093/bioinformatics/btg414

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AnaGram: protein function assignment.

A J Pérez·G Thode·O Trelles

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Abstract

SUMMARY: AnaGram is a web service for protein function assignment based on identity detection of small significant fragments (protomotifs) that can act as modular pieces in peptide construction. The system is able to assign function by finding correlations between protomotifs and functional annotations contained in SWISS-PROT and Medline databases. In addition, function ontologies are used for hierarchical organization of the predicted functions. Extensive tests have been carried out to evaluate the accuracy and performance of the system. AVAILABILITY: http://jaguar.genetica.uma.es/anagram.htm

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Algorithms Amino Acid Motifs Documentation Information Storage and Retrieval Internet MEDLINE Natural Language Processing Periodicals as Topic Proteins Sequence Alignment Sequence Analysis, Protein Software Structure-Activity Relationship User-Computer Interface Journal Article Research Support, Non-U.S. Gov't

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BibTeX RIS

A J Pérez, G Thode, O Trelles. 2004-01-22. AnaGram: protein function assignment.. https://doi.org/10.1093/bioinformatics%2Fbtg414

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