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ArrayExpress: a public database of gene expression data at EBI.

Philippe Rocca-Serra·Alvis Brazma·Helen Parkinson·Ugis Sarkans·Mohammadreza Shojatalab·Sergio Contrino·Jaak Vilo·Niran Abeygunawardena·Gaurab Mukherjee·Ele Holloway·Misha Kapushesky·Patrick Kemmeren·Gonzalo Garcia Lara·Ahmet Oezcimen·Susanna-Assunta Sansone
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Abstract

ArrayExpress is a public repository for microarray-based gene expression data, resulting from the implementation of the MAGE object model to ensure accurate data structuring and the MIAME standard, which defines the annotation requirements. ArrayExpress accepts data as MAGE-ML files for direct submissions or data from MIAMExpress, the MIAME compliant web-based annotation and submission tool of EBI. A team of curators supports the submission process, providing assistance in data annotation. Data retrieval is performed through a dedicated web interface. Relevant results may be exported to ExpressionProfiler, the EBI based expression analysis tool available online (http://www.ebi.ac.uk/arrayexpress).

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Computational BiologyDatabases, GeneticGene ExpressionOligonucleotide Array Sequence AnalysisJournal ArticleResearch Support, Non-U.S. Gov't

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Philippe Rocca-Serra, Alvis Brazma, Helen Parkinson, Ugis Sarkans, Mohammadreza Shojatalab, Sergio Contrino, Jaak Vilo, Niran Abeygunawardena, Gaurab Mukherjee, Ele Holloway, Misha Kapushesky, Patrick Kemmeren, Gonzalo Garcia Lara, Ahmet Oezcimen, Susanna-Assunta Sansone. ArrayExpress: a public database of gene expression data at EBI.. https://doi.org/10.1016/j.crvi.2003.09.026

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