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Visualization for genomics: the Microbial Genome Viewer.

Robert Kerkhoven·Frank H J van Enckevort·Jos Boekhorst·Douwe Molenaar·Roland J Siezen
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Abstract

SUMMARY: A Web-based visualization tool, the Microbial Genome Viewer, is presented that allows the user to combine complex genomic data in a highly interactive way. This Web tool enables the interactive generation of chromosome wheels and linear genome maps from genome annotation data stored in a MySQL database. The generated images are in scalable vector graphics (SVG) format, which is suitable for creating high-quality scalable images and dynamic Web representations. Gene-related data such as transcriptome and time-course microarray experiments can be superimposed on the maps for visual inspection. AVAILABILITY: The Microbial Genome Viewer 1.0 is freely available at http://www.cmbi.kun.nl/MGV

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Chromosome MappingComputer GraphicsGene Expression ProfilingGenome, BacterialGenome, FungalGenomicsInformation Storage and RetrievalInternetOnline SystemsUser-Computer InterfaceJournal ArticleResearch Support, Non-U.S. Gov't

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Robert Kerkhoven, Frank H J van Enckevort, Jos Boekhorst, Douwe Molenaar, Roland J Siezen. 2004-02-26. Visualization for genomics: the Microbial Genome Viewer.. https://doi.org/10.1093/bioinformatics%2Fbth159

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