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matchprobes: a Bioconductor package for the sequence-matching of microarray probe elements.

Wolfgang Huber·Robert Gentleman
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Abstract

UNLABELLED: The nucleotide sequences of the probes on a microarray can be used for a variety of purposes in the analysis of microarray experiments. We describe software and a paradigm for the creation of data packages for curating, distributing and working with probe sequence data in a uniform, across-types-of-microarrays manner. While the implementation is specific to the Bioconductor project, the ideas and general strategies are more general and could be easily adopted by other projects. AVAILABILITY: The R package matchprobes is available under LGPL at http://www.bioconductor.org SUPPLEMENTARY INFORMATION: The package contains documentation in the form of a vignette and manual pages.

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AlgorithmsDNA ProbesInformation Storage and RetrievalOligonucleotide Array Sequence AnalysisSequence AlignmentSequence Analysis, DNASequence Homology, Nucleic AcidSoftwareJournal Article

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Wolfgang Huber, Robert Gentleman. 2004-02-26. matchprobes: a Bioconductor package for the sequence-matching of microarray probe elements.. https://doi.org/10.1093/bioinformatics%2Fbth133

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