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The Ensembl core software libraries.

Arne Stabenau·Graham McVicker·Craig Melsopp·Glenn Proctor·Michele Clamp·Ewan Birney
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Abstract

Systems for managing genomic data must store a vast quantity of information. Ensembl stores these data in several MySQL databases. The core software libraries provide a practical and effective means for programmers to access these data. By encapsulating the underlying database structure, the libraries present end users with a simple, abstract interface to a complex data model. Programs that use the libraries rather than SQL to access the data are unaffected by most schema changes. The architecture of the core software libraries, the schema, and the factors influencing their design are described. All code and data are freely available.

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AnimalsComputational BiologyDatabases, GeneticHumansSoftwareSoftware DesignJournal ArticleResearch Support, Non-U.S. Gov'tResearch Support, U.S. Gov't, P.H.S.Review

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Arne Stabenau, Graham McVicker, Craig Melsopp, Glenn Proctor, Michele Clamp, Ewan Birney. 2004. The Ensembl core software libraries.. https://doi.org/10.1101/gr.1857204

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