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PubMed · 15180933

Visualizations for taxonomic and phylogenetic trees.

Cynthia Sims Parr·Bongshin Lee·Dana Campbell·Benjamin B Bederson
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Abstract

MOTIVATION: Despite substantial efforts to develop and populate the back-ends of biological databases, front-ends to these systems often rely on taxonomic expertise. This research applies techniques from human-computer interaction research to the biodiversity domain. RESULTS: We developed an interactive node-link tool, TaxonTree, illustrating the value of a carefully designed interaction model, animation, and integrated searching and browsing towards retrieval of biological names and other information. Users tested the tool using a new, large integrated dataset of animal names with phylogenetic-based and classification-based tree structures. These techniques also translated well for a tool, DoubleTree, to allow comparison of trees using coupled interaction. Our approaches will be useful not only for biological data but as general portal interfaces.

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AlgorithmsAnimalsClassificationComputer GraphicsDatabase Management SystemsDatabases, FactualInformation Storage and RetrievalPhylogenySoftwareUser-Computer InterfaceEvaluation StudyJournal ArticleResearch Support, U.S. Gov't, Non-P.H.S.

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Cynthia Sims Parr, Bongshin Lee, Dana Campbell, Benjamin B Bederson. 2004-06-04. Visualizations for taxonomic and phylogenetic trees.. https://doi.org/10.1093/bioinformatics%2Fbth345

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