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PubMed · 15371639

Self-similar mitochondrial DNA.

Nestor N Oiwa·James A Glazier
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Abstract

We show that repeated sequences, like palindromes (local repetitions) and homologies between two different nucleotide sequences (motifs along the genome), compose a self-similar (fractal) pattern in mitochondrial DNA. This self-similarity comes from the looplike structures distributed along the genome. The looplike structures generate scaling laws in a pseudorandom DNA walk constructed from the sequence, called a Lévy flight. We measure the scaling laws from the generalized fractal dimension and singularity spectrum for mitochondrial DNA walks for 35 different species. In particular, we report characteristic loop distributions for mammal mitochondrial genomes.

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AlgorithmsAmino Acid MotifsAnimalsBase SequenceBiophysicsDNA, MitochondrialDimerizationFractalsGenomeHumansHydrogen BondingMitochondriaMolecular Sequence DataNucleic Acid ConformationRNA, Ribosomal, 16SJournal ArticleResearch Support, Non-U.S. Gov'tResearch Support, U.S. Gov't, Non-P.H.S.

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Nestor N Oiwa, James A Glazier. 2004. Self-similar mitochondrial DNA.. https://doi.org/10.1385/cbb%3A41%3A1%3A041

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