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SNPP: automating large-scale SNP genotype data management.

Lan-Juan Zhao·Miao-Xin Li·Yan-Fang Guo·Fu-Hua Xu·Jin-Long Li·Hong-Wen Deng
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Abstract

UNLABELLED: To manage high-throughput single nucleotide polymorphism (SNP) genotyping data efficiently, we developed a dynamic general database management system-SNPP (SNP Processor). It provides several functions, including data importing with comparison, Mendelian inheritance check within pedigrees, data compiling and exporting. Furthermore, SNPP may generate files for repeat genotyping and transform them into files that can be executed by a liquid handling system. AVAILABILITY: http://orclinux.creighton.edu/snpp/ CONTACT: lanjuanzhao@creighton.edu

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AlgorithmsChromosome MappingDatabase Management SystemsDatabases, Nucleic AcidGenotypeInformation Storage and RetrievalInternetLinkage DisequilibriumSequence AlignmentSequence Analysis, DNASoftwareUser-Computer InterfaceJournal ArticleResearch Support, Non-U.S. Gov'tResearch Support, U.S. Gov't, Non-P.H.S.Research Support, U.S. Gov't, P.H.S.

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Lan-Juan Zhao, Miao-Xin Li, Yan-Fang Guo, Fu-Hua Xu, Jin-Long Li, Hong-Wen Deng. 2004-09-17. SNPP: automating large-scale SNP genotype data management.. https://doi.org/10.1093/bioinformatics%2Fbth486

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