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VBASE2, an integrative V gene database.

Ida Retter·Hans Helmar Althaus·Richard Münch·Werner Müller
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Abstract

The database VBASE2 provides germ-line sequences of human and mouse immunoglobulin variable (V) genes. It acts as an interconnecting platform between several existing self-contained data systems: VBASE2 integrates genome sequence data and links to the V genes in the Ensembl Genome Browser. For a single V gene sequence, all references to the EMBL nucleotide sequence database are provided, including references for V(D)J rearrangements. Furthermore, cross-references to the VBASE database, the IMGT database and the Kabat database are available. A DAS server allows the display of VBASE2 V genes within the Ensembl Genome Browser. VBASE2 can be accessed either by a web-based text query or by a sequence similarity search with the DNAPLOT software. VBASE2 is available at http://www.vbase2.org, and the DAS server is located at http://www.dnaplot.com/das.

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AnimalsDatabases, Nucleic AcidGenes, ImmunoglobulinHumansImmunoglobulin Variable RegionMiceSystems IntegrationUser-Computer InterfaceJournal ArticleResearch Support, Non-U.S. Gov't

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Ida Retter, Hans Helmar Althaus, Richard Münch, Werner Müller. 2005-01-01. VBASE2, an integrative V gene database.. https://doi.org/10.1093/nar%2Fgki088

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