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TOM software toolbox: acquisition and analysis for electron tomography.

Stephan Nickell·Friedrich Förster·Alexandros Linaroudis·William Del Net·Florian Beck·Reiner Hegerl·Wolfgang Baumeister·Jürgen M Plitzko
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Abstract

Automated data acquisition procedures have changed the perspectives of electron tomography (ET) in a profound manner. Elaborate data acquisition schemes with autotuning functions minimize exposure of the specimen to the electron beam and sophisticated image analysis routines retrieve a maximum of information from noisy data sets. "TOM software toolbox" integrates established algorithms and new concepts tailored to the special needs of low dose ET. It provides a user-friendly unified platform for all processing steps: acquisition, alignment, reconstruction, and analysis. Designed as a collection of computational procedures it is a complete software solution within a highly flexible framework. TOM represents a new way of working with the electron microscope and can serve as the basis for future high-throughput applications.

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AlgorithmsHumansImage Processing, Computer-AssistedSoftwareTomographyUser-Computer InterfaceJournal ArticleResearch Support, Non-U.S. Gov't

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BibTeXRIS

Stephan Nickell, Friedrich Förster, Alexandros Linaroudis, William Del Net, Florian Beck, Reiner Hegerl, Wolfgang Baumeister, Jürgen M Plitzko. 2005. TOM software toolbox: acquisition and analysis for electron tomography.. https://doi.org/10.1016/j.jsb.2004.10.006

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