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PubMed · 15972014

Bioinformatics visualization and integration with open standards: the Bluejay genomic browser.

Andrei L Turinsky·Andrew C Ah-Seng·Paul M K Gordon·Julie N Stromer·Morgan L Taschuk·Emily W Xu·Christoph W Sensen
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Abstract

We have created a new Java-based integrated computational environment for the exploration of genomic data, called Bluejay. The system is capable of using almost any XML file related to genomic data. Non-XML data sources can be accessed via a proxy server. Bluejay has several features, which are new to Bioinformatics, including an unlimited semantic zoom capability, coupled with Scalable Vector Graphics (SVG) outputs; an implementation of the XLink standard, which features access to MAGPIE Genecards as well as any BioMOBY service accessible over the Internet; and the integration of gene chip analysis tools with the functional assignments. The system can be used as a signed web applet, Web Start, and a local stand-alone application, with or without connection to the Internet. It is available free of charge and as open source via http://bluejay.ucalgary.ca.

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Computational BiologyComputer GraphicsDatabase Management SystemsDatabases, GeneticInternetModels, TheoreticalProgramming LanguagesSoftware DesignUser-Computer InterfaceJournal ArticleResearch Support, Non-U.S. Gov't

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Andrei L Turinsky, Andrew C Ah-Seng, Paul M K Gordon, Julie N Stromer, Morgan L Taschuk, Emily W Xu, Christoph W Sensen. 2005. Bioinformatics visualization and integration with open standards: the Bluejay genomic browser.. https://pubmed.ncbi.nlm.nih.gov/15972014/

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