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TRAMPLE: the transmembrane protein labelling environment.

Piero Fariselli·Michele Finelli·Ivan Rossi·Mauro Amico·Andrea Zauli·Pier Luigi Martelli·Rita Casadio
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Abstract

TRAMPLE (http://gpcr.biocomp.unibo.it/biodec/) is a web application server dedicated to the detection and the annotation of transmembrane protein sequences. TRAMPLE includes different state-of-the-art algorithms for the prediction of signal peptides, transmembrane segments (both beta-strands and alpha-helices), secondary structure and fast fold recognition. TRAMPLE also includes a complete content management system to manage the results of the predictions. Each user of the server has his/her own workplace, where the data can be stored, organized, accessed and annotated with documents through a simple web-based interface. In this manner, TRAMPLE significantly improves usability with respect to other more traditional web servers.

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AlgorithmsComputer SecurityDatabase Management SystemsInternetMembrane ProteinsProtein FoldingProtein Sorting SignalsProtein Structure, SecondarySequence Analysis, ProteinSoftwareJournal ArticleResearch Support, Non-U.S. Gov't

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Piero Fariselli, Michele Finelli, Ivan Rossi, Mauro Amico, Andrea Zauli, Pier Luigi Martelli, Rita Casadio. 2005-07-01. TRAMPLE: the transmembrane protein labelling environment.. https://doi.org/10.1093/nar%2Fgki440

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