MINER: software for phylogenetic motif identification.

David La; Dennis R Livesay

doi:10.1093/nar/gki465

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MINER: software for phylogenetic motif identification.

David La·Dennis R Livesay

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Abstract

MINER is web-based software for phylogenetic motif (PM) identification. PMs are sequence regions (fragments) that conserve the overall familial phylogeny. PMs have been shown to correspond to a wide variety of catalytic regions, substrate-binding sites and protein interfaces, making them ideal functional site predictions. The MINER output provides an intuitive interface for interactive PM sequence analysis and structural visualization. The web implementation of MINER is freely available at http://www.pmap.csupomona.edu/MINER/. Source code is available to the academic community on request.

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Amino Acid Motifs Conserved Sequence Internet Models, Molecular Phylogeny Protein Conformation Proteins Sequence Alignment Sequence Analysis, Protein Software User-Computer Interface Journal Article Research Support, Non-U.S. Gov't

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David La, Dennis R Livesay. 2005-07-01. MINER: software for phylogenetic motif identification.. https://doi.org/10.1093/nar%2Fgki465

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