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The FOLDALIGN web server for pairwise structural RNA alignment and mutual motif search.

Jakob H Havgaard·Rune B Lyngsø·Jan Gorodkin
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Abstract

Foldalign is a Sankoff-based algorithm for making structural alignments of RNA sequences. Here, we present a web server for making pairwise alignments between two RNA sequences, using the recently updated version of foldalign. The server can be used to scan two sequences for a common structural RNA motif of limited size, or the entire sequences can be aligned locally or globally. The web server offers a graphical interface, which makes it simple to make alignments and manually browse the results. The web server can be accessed at http://foldalign.kvl.dk.

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AlgorithmsComputer GraphicsInternetNucleic Acid ConformationRNASequence AlignmentSequence Analysis, RNASoftwareUser-Computer InterfaceJournal ArticleResearch Support, Non-U.S. Gov't

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Jakob H Havgaard, Rune B Lyngsø, Jan Gorodkin. 2005-07-01. The FOLDALIGN web server for pairwise structural RNA alignment and mutual motif search.. https://doi.org/10.1093/nar%2Fgki473

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