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TargetIdentifier: a webserver for identifying full-length cDNAs from EST sequences.

Xiang Jia Min·Gregory Butler·Reginald Storms·Adrian Tsang
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Abstract

TargetIdentifier is a webserver that identifies full-length cDNA sequences from the expressed sequence tag (EST)-derived contig and singleton data. To accomplish this TargetIdentifier uses BLASTX alignments as a guide to locate protein coding regions and potential start and stop codons. This information is then used to determine whether the EST-derived sequences include their translation start codons. The algorithm also uses the BLASTX output to assign putative functions to the query sequences. The server is available at https://fungalgenome.concordia.ca/tools/TargetIdentifier.html.

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AlgorithmsAspergillus nigerCodonDNA, ComplementaryDatabases, GeneticExpressed Sequence TagsHumansInternetSequence AlignmentSequence Analysis, DNASoftwareUser-Computer InterfaceEvaluation StudyJournal ArticleResearch Support, Non-U.S. Gov't

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Xiang Jia Min, Gregory Butler, Reginald Storms, Adrian Tsang. 2005-07-01. TargetIdentifier: a webserver for identifying full-length cDNAs from EST sequences.. https://doi.org/10.1093/nar%2Fgki436

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