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FACT--a framework for the functional interpretation of high-throughput experiments.

Felix Kokocinski·Nicolas Delhomme·Gunnar Wrobel·Lars Hummerich·Grischa Toedt·Peter Lichter
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Abstract

BACKGROUND: Interpreting the results of high-throughput experiments, such as those obtained from DNA-microarrays, is an often time-consuming task due to the high number of data-points that need to be analyzed in parallel. It is usually a matter of extensive testing and unknown beforehand, which of the possible approaches for the functional analysis will be the most informative. RESULTS: To address this problem, we have developed the Flexible Annotation and Correlation Tool (FACT). FACT allows for detection of important patterns in large data sets by simplifying the integration of heterogeneous data sources and the subsequent application of different algorithms for statistical evaluation or visualization of the annotated data. The system is constantly extended to include additional annotation data and comparison methods. CONCLUSION: FACT serves as a highly flexible framework for the explorative analysis of large genomic and proteomic result sets. The program can be used online; open source code and supplementary information are available at http://www.factweb.de.

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AlgorithmsCluster AnalysisComputer SimulationElectronic Data ProcessingGene Expression ProfilingModels, StatisticalOligonucleotide Array Sequence AnalysisPattern Recognition, AutomatedSoftwareSystems IntegrationEvaluation StudyJournal ArticleResearch Support, Non-U.S. Gov't

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Felix Kokocinski, Nicolas Delhomme, Gunnar Wrobel, Lars Hummerich, Grischa Toedt, Peter Lichter. 2005-06-28. FACT--a framework for the functional interpretation of high-throughput experiments.. https://doi.org/10.1186/1471-2105-6-161

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