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PubMed · 16105898

MESHI: a new library of Java classes for molecular modeling.

Nir Kalisman·Ami Levi·Tetyana Maximova·Dan Reshef·Sharon Zafriri-Lynn·Yan Gleyzer·Chen Keasar
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Abstract

UNLABELLED: Adapting a modular and object-oriented approach in the design of molecular modeling packages may reduce the software development barrier between ideas and their programed applications. Towards this goal we developed MESHI, a new, strictly object-oriented, molecular modeling suite written in Java. MESHI provides a comprehensive library of extendable classes for all the essential components of molecular modeling: molecular and geometry elements, energy functions and optimization methods. AVAILABILITY: MESHI and its related documentation are freely available at http://www.cs.bgu.ac.il/~meshi; the MESHI API is available at http://www.cs.bgu.ac.il/~meshi/API CONTACT: keasar@cs.bgu.ac.il SUPPLEMENTARY INFORMATION: The Supplementary information includes (1) a detailed description of several key packages and classes, and (2) a brief presentation of results achieved by using the MESHI application--Beautify--in the CASP6 experiment.

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Computer SimulationModels, ChemicalModels, MolecularProgramming LanguagesProtein ConformationProteinsSequence Analysis, ProteinSoftwareJournal ArticleResearch Support, Non-U.S. Gov't

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Nir Kalisman, Ami Levi, Tetyana Maximova, Dan Reshef, Sharon Zafriri-Lynn, Yan Gleyzer, Chen Keasar. 2005-08-16. MESHI: a new library of Java classes for molecular modeling.. https://doi.org/10.1093/bioinformatics%2Fbti630

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