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ORIOGEN: order restricted inference for ordered gene expression data.

S Peddada·S Harris·J Zajd·E Harvey
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Abstract

UNLABELLED: ORIOGEN is a user-friendly Java-based software package for selecting and clustering genes according to their profiles across various treatment groups. In particular, ORIOGEN is useful for analyzing data obtained from time-course or dose-response type experiments. AVAILABILITY: The ORIOGEN software can be downloaded freely from http://dir.niehs.nih.gov/dirbb/oriogen/index.cfm CONTACT: peddada@niehs.nih.gov (for statistical questions) and oriogen@constellagroup.com (for software support) SUPPLEMENTARY INFORMATION: ORIOGEN has a full set of help files. Also, an example input file is provided with the download.

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AlgorithmsGene Expression ProfilingOligonucleotide Array Sequence AnalysisSoftwareUser-Computer InterfaceJournal Article

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BibTeXRIS

S Peddada, S Harris, J Zajd, E Harvey. 2005-08-18. ORIOGEN: order restricted inference for ordered gene expression data.. https://doi.org/10.1093/bioinformatics%2Fbti637

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