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Galaxy: a platform for interactive large-scale genome analysis.

Belinda Giardine·Cathy Riemer·Ross C Hardison·Richard Burhans·Laura Elnitski·Prachi Shah·Yi Zhang·Daniel Blankenberg·Istvan Albert·James Taylor·Webb Miller·W James Kent·Anton Nekrutenko
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Abstract

Accessing and analyzing the exponentially expanding genomic sequence and functional data pose a challenge for biomedical researchers. Here we describe an interactive system, Galaxy, that combines the power of existing genome annotation databases with a simple Web portal to enable users to search remote resources, combine data from independent queries, and visualize the results. The heart of Galaxy is a flexible history system that stores the queries from each user; performs operations such as intersections, unions, and subtractions; and links to other computational tools. Galaxy can be accessed at http://g2.bx.psu.edu.

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Biological EvolutionDatabases, GeneticGenomeInternetPromoter Regions, GeneticJournal ArticleResearch Support, N.I.H., ExtramuralResearch Support, Non-U.S. Gov'tResearch Support, U.S. Gov't, P.H.S.

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Belinda Giardine, Cathy Riemer, Ross C Hardison, Richard Burhans, Laura Elnitski, Prachi Shah, Yi Zhang, Daniel Blankenberg, Istvan Albert, James Taylor, Webb Miller, W James Kent, Anton Nekrutenko. 2005-09-16. Galaxy: a platform for interactive large-scale genome analysis.. https://doi.org/10.1101/gr.4086505

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