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GenomeDiagram: a python package for the visualization of large-scale genomic data.

Leighton Pritchard·Jennifer A White·Paul R J Birch·Ian K Toth
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Abstract

UNLABELLED: We present GenomeDiagram, a flexible, open-source Python module for the visualization of large-scale genomic, comparative genomic and other data with reference to a single chromosome or other biological sequence. GenomeDiagram may be used to generate publication-quality vector graphics, rastered images and in-line streamed graphics for webpages. The package integrates with datatypes from the BioPython project, and is available for Windows, Linux and Mac OS X systems. AVAILABILITY: GenomeDiagram is freely available as source code (under GNU Public License) at http://bioinf.scri.ac.uk/lp/programs.html, and requires Python 2.3 or higher, and recent versions of the ReportLab and BioPython packages. SUPPLEMENTARY INFORMATION: A user manual, example code and images are available at http://bioinf.scri.ac.uk/lp/programs.html.

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Chromosome MappingComputer GraphicsDatabase Management SystemsDatabases, GeneticInformation Storage and RetrievalProgramming LanguagesSoftwareUser-Computer InterfaceJournal ArticleResearch Support, Non-U.S. Gov't

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Leighton Pritchard, Jennifer A White, Paul R J Birch, Ian K Toth. 2005-12-23. GenomeDiagram: a python package for the visualization of large-scale genomic data.. https://doi.org/10.1093/bioinformatics%2Fbtk021

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