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PubMed · 16381902

CryptoDB: a Cryptosporidium bioinformatics resource update.

Mark Heiges·Haiming Wang·Edward Robinson·Cristina Aurrecoechea·Xin Gao·Nivedita Kaluskar·Philippa Rhodes·Sammy Wang·Cong-Zhou He·Yanqi Su·John Miller·Eileen Kraemer·Jessica C Kissinger
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Abstract

The database, CryptoDB (http://CryptoDB.org), is a community bioinformatics resource for the AIDS-related apicomplexan-parasite, Cryptosporidium. CryptoDB integrates whole genome sequence and annotation with expressed sequence tag and genome survey sequence data and provides supplemental bioinformatics analyses and data-mining tools. A simple, yet comprehensive web interface is available for mining and visualizing the data. CryptoDB is allied with the databases PlasmoDB and ToxoDB via ApiDB, an NIH/NIAID-fundedBioinformatics Resource Center. Recent updates to CryptoDB include the deposition of annotated genome sequences for Cryptosporidium parvum and Cryptosporidium hominis, migration to a relational database (GUS), a new query and visualization interface and the introduction of Web services.

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AnimalsComputational BiologyCryptosporidiumCryptosporidium parvumDatabases, GeneticGenome, ProtozoanGenomicsInternetProtozoan ProteinsSoftwareUser-Computer InterfaceJournal ArticleResearch Support, N.I.H., Extramural

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Mark Heiges, Haiming Wang, Edward Robinson, Cristina Aurrecoechea, Xin Gao, Nivedita Kaluskar, Philippa Rhodes, Sammy Wang, Cong-Zhou He, Yanqi Su, John Miller, Eileen Kraemer, Jessica C Kissinger. 2006-01-01. CryptoDB: a Cryptosporidium bioinformatics resource update.. https://doi.org/10.1093/nar%2Fgkj078

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