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[The time scale in poxvirus evolution].

I V Babkin·S N Shchelkunov
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Abstract

Unlike vertebrates and RNA-containing viruses, the objective estimate of molecular clock for DNA-containing viruses was so far absent. An extended central conservative genomic region of orthopoxviruses (about 102 kbp) and the sequence of DNA polymerase gene (about 3 kbp) of the viruses belonging to various genera from the family Poxviridae were analyzed. During this analysis, the known dating of variola virus (VARV) transfer from West Africa to South America (XVI century) and our own data on close phylogenetic relations between the modem West African and South American VARV isolates were used. As a result of this work, it was calculated for the first time that the rate of mutation accumulation in these DNA-containing viruses amounted to 0.9-1.2 x 10(-6) substitutions per site per year. The poxviruses started separating from the ancestor virus to form the modem genera approximately 500 thousand years ago; the ancestor of the genus Orthopoxvirus separated about 300 thousand years ago; and its division into the modem studied species took place approximately 14 thousand years ago.

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DNA, ViralDNA-Directed DNA PolymeraseEvolution, MolecularMutationOrthopoxvirusPhylogenyPoxviridaeVariola virusEnglish AbstractJournal Article

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I V Babkin, S N Shchelkunov. [The time scale in poxvirus evolution].. https://doi.org/10.1134/s0026893306010043

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