PubMed Health⌕ Search

PubMed · 16795130

A spatial scan statistic for ordinal data.

Abstract

Spatial scan statistics are widely used for count data to detect geographical disease clusters of high or low incidence, mortality or prevalence and to evaluate their statistical significance. Some data are ordinal or continuous in nature, however, so that it is necessary to dichotomize the data to use a traditional scan statistic for count data. There is then a loss of information and the choice of cut-off point is often arbitrary. In this paper, we propose a spatial scan statistic for ordinal data, which allows us to analyse such data incorporating the ordinal structure without making any further assumptions. The test statistic is based on a likelihood ratio test and evaluated using Monte Carlo hypothesis testing. The proposed method is illustrated using prostate cancer grade and stage data from the Maryland Cancer Registry. The statistical power, sensitivity and positive predicted value of the test are examined through a simulation study.

Explore related subjects

Keep this discovery

Explore connections, maps & timelines

BibTeXRIS

Inkyung Jung, Martin Kulldorff, Ann C Klassen. 2007-03-30. A spatial scan statistic for ordinal data.. https://doi.org/10.1002/sim.2607

Cite the original work for its findings. Save a collection to share your selection of sources.

KEEP EXPLORING

Related citations

Clustering individuals using INMTD: a novel versatile multi-view embedding framework integrating omics and imaging data.

MOTIVATION: Combining omics and images can lead to a more comprehensive clustering of individuals than classic single-view approaches. Among the various approaches for multi-view clustering, nonnegative matrix tri-factorization (NMTF) and nonnegative Tucker decomposition (NTD) are advantageous in learning low-rank embeddings with promising interpretability. Besides, there is a need to handle unwanted drivers of clusterings (i.e. confounders). RESULTS: In this work, we introduce a novel multi-view clustering method based on NMTF and NTD, named INMTD, which integrates omics and 3D imaging data to derive unconfounded subgroups of individuals. According to the adjusted Rand index, INMTD outperformed other clustering methods on a synthetic dataset with known clusters. In the application to real-life facial-genomic data, INMTD generated biologically relevant embeddings for individuals, genetics, and facial morphology. By removing confounded embedding vectors, we derived an unconfounded clustering with better internal and external quality; the genetic and facial annotations of each derived subgroup highlighted distinctive characteristics. In conclusion, INMTD can effectively integrate omics data and 3D images for unconfounded clustering with biologically meaningful interpretation. AVAILABILITY AND IMPLEMENTATION: INMTD is freely available at https://github.com/ZuqiLi/INMTD.

Cluster Analysis↗

Relative efficiency of unequal versus equal cluster sizes in cluster randomized and multicentre trials.

Cluster randomized and multicentre trials evaluate the effect of a treatment on persons nested within clusters, for instance, patients within clinics or pupils within schools. Optimal sample sizes at the cluster (centre) and person level have been derived under the restrictive assumption of equal sample sizes per cluster. This paper addresses the relative efficiency of unequal versus equal cluster sizes in case of cluster randomization and person randomization within clusters. Starting from maximum likelihood parameter estimation, the relative efficiency is investigated numerically for a range of cluster size distributions. An approximate formula is presented for computing the relative efficiency as a function of the mean and variance of cluster size and the intraclass correlation, which can be used for adjusting the sample size. The accuracy of this formula is checked against the numerical results and found to be quite good. It is concluded that the loss of efficiency due to variation of cluster sizes rarely exceeds 10 per cent and can be compensated by sampling 11 per cent more clusters.

Cluster Analysis↗

Analysis of cluster randomized cross-over trial data: a comparison of methods.

In a cluster randomized cross-over trial, all participating clusters receive both intervention and control treatments consecutively, in separate time periods. Patients recruited by each cluster within the same time period receive the same intervention, and randomization determines order of treatment within a cluster. Such a design has been used on a number of occasions. For analysis of the trial data, the approach of analysing cluster-level summary measures is appealing on the grounds of simplicity, while hierarchical modelling allows for the correlation of patients within periods within clusters and offers flexibility in the model assumptions. We consider several cluster-level approaches and hierarchical models and make comparison in terms of empirical precision, coverage, and practical considerations. The motivation for a cluster randomized trial to employ cross-over of trial arms is particularly strong when the number of clusters available is small, so we examine performance of the methods under small, medium and large (6, 18, 30) numbers of clusters. One hierarchical model and two cluster-level methods were found to perform consistently well across the designs considered. These three methods are efficient, provide appropriate standard errors and coverage, and continue to perform well when incorporating adjustment for an individual-level covariate. We conclude that choice between hierarchical models and cluster-level methods should be influenced by the extent of complexity in the planned analysis.

Cluster Analysis↗