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Serial NetEvolve: a flexible utility for generating serially-sampled sequences along a tree or recombinant network.

Patricia Buendia·Giri Narasimhan
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Abstract

UNLABELLED: Serial NetEvolve is a flexible simulation program that generates DNA sequences evolved along a tree or recombinant network. It offers a user-friendly Windows graphical interface and a Windows or Linux simulator with a diverse selection of parameters to control the evolutionary model. Serial NetEvolve is a modification of the Treevolve program with the following additional features: simulation of serially-sampled data, the choice of either a clock-like or a variable rate model of sequence evolution, sampling from the internal nodes and the output of the randomly generated tree or network in our newly proposed NeTwick format. AVAILABILITY: From website http://biorg.cis.fiu.edu/SNE Contacts: giri@cis.fiu.edu SUPPLEMENTARY INFORMATION: Manual and examples available from http://biorg.cis.fiu.edu/SNE.

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AlgorithmsComputer GraphicsComputer SimulationEvolution, MolecularModels, GeneticRecombination, GeneticSequence Analysis, DNASignal TransductionSoftwareUser-Computer InterfaceJournal ArticleResearch Support, N.I.H., Extramural

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Patricia Buendia, Giri Narasimhan. 2006-07-14. Serial NetEvolve: a flexible utility for generating serially-sampled sequences along a tree or recombinant network.. https://doi.org/10.1093/bioinformatics%2Fbtl387

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