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SynView: a GBrowse-compatible approach to visualizing comparative genome data.

Haiming Wang·Yanqi Su·Aaron J Mackey·Eileen T Kraemer·Jessica C Kissinger
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Abstract

UNLABELLED: We present SynView, a simple and generic approach to dynamically visualize multi-species comparative genome data. It is a light-weight application based on the popular and configurable web-based GBrowse framework. It can be used with a variety of databases and provides the user with a high degree of interactivity. The tool is written in Perl and runs on top of the GBrowse framework. It is in use in the PlasmoDB (http://www.PlasmoDB.org) and the CryptoDB (http://www.CryptoDB.org) projects and can be easily integrated into other cross-species comparative genome projects. AVAILABILITY: The program and instructions are freely available at http://www.ApiDB.org/apps/SynView/ CONTACT: jkissing@uga.edu.

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AlgorithmsChromosome MappingComputer GraphicsGenomeSequence AlignmentSequence Analysis, DNASoftwareSpecies SpecificityUser-Computer InterfaceComparative StudyJournal ArticleResearch Support, N.I.H., Extramural

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Haiming Wang, Yanqi Su, Aaron J Mackey, Eileen T Kraemer, Jessica C Kissinger. 2006-07-14. SynView: a GBrowse-compatible approach to visualizing comparative genome data.. https://doi.org/10.1093/bioinformatics%2Fbtl389

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