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MASQOT-GUI: spot quality assessment for the two-channel microarray platform.

Max Bylesjö·Andreas Sjödin·Daniel Eriksson·Henrik Antti·Thomas Moritz·Stefan Jansson·Johan Trygg
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Abstract

UNLABELLED: MASQOT-GUI provides an open-source, platform-independent software pipeline for two-channel microarray spot quality control. This includes gridding, segmentation, quantification, quality assessment and data visualization. It hosts a set of independent applications, with interactions between the tools as well as import and export support for external software. The implementation of automated multivariate quality control assessment, which is a unique feature of MASQOT-GUI, is based on the previously documented and evaluated MASQOT methodology. Further abilities of the application are outlined and illustrated. AVAILABILITY: MASQOT-GUI is Java-based and licensed under the GNU LGPL. Source code and installation files are available for download at http://masqot-gui.sourceforge.net/

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Computer GraphicsIn Situ Hybridization, FluorescenceInformation Storage and RetrievalOligonucleotide Array Sequence AnalysisQuality ControlSoftwareSpectrometry, FluorescenceUser-Computer InterfaceEvaluation StudyJournal ArticleResearch Support, Non-U.S. Gov't

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Max Bylesjö, Andreas Sjödin, Daniel Eriksson, Henrik Antti, Thomas Moritz, Stefan Jansson, Johan Trygg. 2006-08-09. MASQOT-GUI: spot quality assessment for the two-channel microarray platform.. https://doi.org/10.1093/bioinformatics%2Fbtl434

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