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PubMed · 17018534

GenoProfiler: batch processing of high-throughput capillary fingerprinting data.

Frank M You·Ming-Cheng Luo·Yong Qiang Gu·Gerard R Lazo·Karin Deal·Jan Dvorak·Olin D Anderson
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Abstract

UNLABELLED: High-throughput content fingerprinting techniques employing capillary electrophoresis place new demands on the editing of fingerprint files for the downstream contig assembly program, FPC. A cross-platform software application, GenoProfiler, was developed for automated editing of sized fingerprinting profiles generated by the ABI Genetic Analyzers. The batch-processing module extracts the sized fragment information directly from the ABI raw trace files, or from data files exported from GeneMapper or other size calling software, removes the background noise and undesired fragments, and generates fragment size files compatible with the FPC software. AVAILABILITY: http://wheat.pw.usda.gov/PhysicalMapping/

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AlgorithmsDatabase Management SystemsDatabases, ProteinElectrophoresis, CapillaryGene Expression ProfilingInformation Storage and RetrievalPeptide MappingSoftwareUser-Computer InterfaceJournal ArticleResearch Support, U.S. Gov't, Non-P.H.S.

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Frank M You, Ming-Cheng Luo, Yong Qiang Gu, Gerard R Lazo, Karin Deal, Jan Dvorak, Olin D Anderson. 2006-10-02. GenoProfiler: batch processing of high-throughput capillary fingerprinting data.. https://doi.org/10.1093/bioinformatics%2Fbtl494

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