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Integration of gel-based proteome data with pProRep.

Kris Laukens·Rune Matthiesen·Filip Lemière·Eddy Esmans·Harry Van Onckelen·Ole Nørregaard Jensen·Erwin Witters
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Abstract

UNLABELLED: pProRep is a web application integrating electrophoretic and mass spectral data from proteome analyses into a relational database. The graphical web-interface allows users to upload, analyse and share experimental proteome data. It offers researchers the possibility to query all previously analysed datasets and can visualize selected features, such as the presence of a certain set of ions in a peptide mass spectrum, on the level of the two-dimensional gel. AVAILABILITY: The pProRep package and instructions for its use can be downloaded from http://www.ptools.ua.ac.be/pProRep. The application requires a web server that runs PHP 5 (http://www.php.net) and MySQL. Some (non-essential) extensions need additional freely available libraries: details are described in the installation instructions.

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Computational BiologyDatabase Management SystemsDatabases, GeneticDatabases, ProteinElectrophoresis, Gel, Two-DimensionalInformation Storage and RetrievalInternetIonsMass SpectrometryPeptidesProgramming LanguagesProteomeProteomicsSoftwareUser-Computer InterfaceJournal ArticleResearch Support, Non-U.S. Gov't

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Kris Laukens, Rune Matthiesen, Filip Lemière, Eddy Esmans, Harry Van Onckelen, Ole Nørregaard Jensen, Erwin Witters. 2006-10-10. Integration of gel-based proteome data with pProRep.. https://doi.org/10.1093/bioinformatics%2Fbtl487

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