GECO--linear visualization for comparative genomics.

C T Kuenne; R Ghai; T Chakraborty; T Hain

doi:10.1093/bioinformatics/btl556

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PubMed · 17077098

GECO--linear visualization for comparative genomics.

C T Kuenne·R Ghai·T Chakraborty·T Hain

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Abstract

UNLABELLED: In order to understand and interpret phylogenetic and functional relationships between multiple prokaryotic species, qualitative and quantitative data must be correlated and displayed. GECO allows linear visualization of multiple genomes using a client/server based approach by dynamically creating .png- or .pdf-formatted images. It is able to display ortholog relations calculated using BLASTCLUST by color coding ortholog representations. Irregularities on the genomic level can be identified by anomalous G/C composition. Thus, this software will enable researchers to detect horizontally transferred genes, pseudogenes and insertions/deletions in related microbial genomes. AVAILABILITY: http://bioinfo.mikrobio.med.uni-giessen.de/geco2/GecoMainServlet

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Algorithms Data Display Evolution, Molecular Genes, Bacterial Genetics, Microbial Information Storage and Retrieval Software Species Specificity User-Computer Interface Journal Article Research Support, Non-U.S. Gov't

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C T Kuenne, R Ghai, T Chakraborty, T Hain. 2006-10-31. GECO--linear visualization for comparative genomics.. https://doi.org/10.1093/bioinformatics%2Fbtl556

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