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A simple spreadsheet-based, MIAME-supportive format for microarray data: MAGE-TAB.

Tim F Rayner·Philippe Rocca-Serra·Paul T Spellman·Helen C Causton·Anna Farne·Ele Holloway·Rafael A Irizarry·Junmin Liu·Donald S Maier·Michael Miller·Kjell Petersen·John Quackenbush·Gavin Sherlock·Christian J Stoeckert·Joseph White·Patricia L Whetzel·Farrell Wymore·Helen Parkinson·Ugis Sarkans·Catherine A Ball·Alvis Brazma
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Abstract

BACKGROUND: Sharing of microarray data within the research community has been greatly facilitated by the development of the disclosure and communication standards MIAME and MAGE-ML by the MGED Society. However, the complexity of the MAGE-ML format has made its use impractical for laboratories lacking dedicated bioinformatics support. RESULTS: We propose a simple tab-delimited, spreadsheet-based format, MAGE-TAB, which will become a part of the MAGE microarray data standard and can be used for annotating and communicating microarray data in a MIAME compliant fashion. CONCLUSION: MAGE-TAB will enable laboratories without bioinformatics experience or support to manage, exchange and submit well-annotated microarray data in a standard format using a spreadsheet. The MAGE-TAB format is self-contained, and does not require an understanding of MAGE-ML or XML.

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Computational BiologyDatabases, GeneticHumansOligonucleotide Array Sequence AnalysisSoftwareEditorialResearch Support, N.I.H., ExtramuralResearch Support, Non-U.S. Gov't

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Tim F Rayner, Philippe Rocca-Serra, Paul T Spellman, Helen C Causton, Anna Farne, Ele Holloway, Rafael A Irizarry, Junmin Liu, Donald S Maier, Michael Miller, Kjell Petersen, John Quackenbush, Gavin Sherlock, Christian J Stoeckert, Joseph White, Patricia L Whetzel, Farrell Wymore, Helen Parkinson, Ugis Sarkans, Catherine A Ball, Alvis Brazma. 2006-11-06. A simple spreadsheet-based, MIAME-supportive format for microarray data: MAGE-TAB.. https://doi.org/10.1186/1471-2105-7-489

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