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PubMed · 17090590

PigGIS: Pig Genomic Informatics System.

Jue Ruan·Yiran Guo·Heng Li·Yafeng Hu·Fei Song·Xin Huang·Karsten Kristiensen·Lars Bolund·Jun Wang
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Abstract

Pig Genomic Information System (PigGIS) is a web-based depository of pig (Sus scrofa) genomic learning mainly engineered for biomedical research to locate pig genes from their human homologs and position single nucleotide polymorphisms (SNPs) in different pig populations. It utilizes a variety of sequence data, including whole genome shotgun (WGS) reads and expressed sequence tags (ESTs), and achieves a successful mapping solution to the low-coverage genome problem. With the data presently available, we have identified a total of 15 700 pig consensus sequences covering 18.5 Mb of the homologous human exons. We have also recovered 18 700 SNPs and 20 800 unique 60mer oligonucleotide probes for future pig genome analyses. PigGIS can be freely accessed via the web at http://www.piggis.org/ and http://pig.genomics.org.cn/.

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AnimalsBase SequenceChromosome MappingConsensus SequenceDatabases, Nucleic AcidExpressed Sequence TagsGenomicsHumansInternetPolymorphism, Single NucleotideSequence AlignmentSwineUser-Computer InterfaceJournal ArticleResearch Support, Non-U.S. Gov't

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Jue Ruan, Yiran Guo, Heng Li, Yafeng Hu, Fei Song, Xin Huang, Karsten Kristiensen, Lars Bolund, Jun Wang. 2006-11-07. PigGIS: Pig Genomic Informatics System.. https://doi.org/10.1093/nar%2Fgkl808

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