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cTrans: generating polypeptide databases from cDNA sequences.

Haibin Xu·Liming Yang·Pei Xu·Ye Tao·Zhengqiang Ma
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Abstract

cTrans is a comprehensive utility used to generate polypeptide databases from cDNA sequences. The goal is achieved through integrating four main functions, including retrieving sequences of species of interest from the downloaded packages from dbEST of GenBank, format conversion, checking and deleting vector and adaptor contamination, and translating the cDNA sequences in all six frames and selecting specific translations for database construction in a user-defined length threshold. In addition, this utility is also applicable to cDNA sequences produced by users themselves.

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Base SequenceComputational BiologyDNA, ComplementaryDatabases, ProteinExpressed Sequence TagsPeptide MappingPeptidesProtein BiosynthesisJournal ArticleResearch Support, Non-U.S. Gov't

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Haibin Xu, Liming Yang, Pei Xu, Ye Tao, Zhengqiang Ma. 2007. cTrans: generating polypeptide databases from cDNA sequences.. https://doi.org/10.1002/pmic.200600508

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