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Software tools for motif and pattern scanning: program descriptions including a universal sequence reading algorithm.

K Y Cockwell·I G Giles
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Abstract

Two programs, MOTIF and PATTERN, that scan sequences for matches to user-defined motifs and patterns of motifs based on identity and set membership are described. The programs use a simple and logical notation to define motifs, and may be used either interactively or by using command line parameters (suitable for batch processing). The two programs described also incorporate a simple, yet reliable, algorithm that automatically detects in which of six possible formats the sequence entry is written.

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AlgorithmsAmino Acid SequenceBase SequencePattern Recognition, AutomatedProgramming LanguagesSoftwareUser-Computer InterfaceJournal ArticleResearch Support, Non-U.S. Gov't

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K Y Cockwell, I G Giles. 1989. Software tools for motif and pattern scanning: program descriptions including a universal sequence reading algorithm.. https://doi.org/10.1093/bioinformatics%2F5.3.227

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