PubMed Health⌕ Search
Home/Archive/PubMed

PubMed · 3198227

An improved standardized procedure for urine mutagenicity testing.

A Rannug·M Olsson·L Aringer·G Brunius
View original source ↗Export metadata ↓

Abstract

The aim of the present study was to optimize the procedures for urinary mutagenicity testing in order to lower the baseline variation in mutagenic activity found in urine from unexposed subjects and to increase the sensitivity of the method. This was accomplished by using urine from nonsmokers and smokers as well as chemically spiked nonsmokers' urine. Diet was standardized. The number of mutants per ml of urine calculated from the linear portion of the dose-response curve was used as a measure of mutagenicity. The parameters investigated were (i) the total volume of urine per resin volume, (ii) the flow rate, (iii) the pH, (iv) the ionic strength of the urine, and (v) elimination of histidine. XAD-2 and C18 Sep-Pak resins recovered mutagens in smokers' urine and in chemically spiked urine with the same efficiency when an optimized procedure was adopted. The optimized procedure using a maximum volume of 50 ml acidified urine per Sep-Pak cartridge, or equal amount of XAD-2 resin, gave well over ten times greater recovery of mutagens from smokers' urine than in earlier reports. Histidine was effectively eliminated, and the background variation was also lowered.

Explore related subjects

HumansMutagenicity TestsMutagensSmokingUrineJournal Article

Keep this discovery

Explore connections, maps & timelines

BibTeXRIS

A Rannug, M Olsson, L Aringer, G Brunius. 1988. An improved standardized procedure for urine mutagenicity testing.. https://pubmed.ncbi.nlm.nih.gov/3198227/

Cite the original work for its findings. Save a collection to share your selection of sources.

KEEP EXPLORING

Related citations

PubMed2027

Global Genomic Surveillance.

Global genomic surveillance has emerged as a foundational pillar of public health in the twenty-first century, enabling real-time tracking of pathogen evolution and informing outbreak response. This chapter examines the strategic architecture of global genomic surveillance, focusing on its application to arboviruses such as chikungunya virus (CHIKV). It explores the integration of genomic data with epidemiological, clinical, and environmental information within a One Health framework, while addressing critical challenges in governance, equity, and interoperability. The discussion covers the entire genomic surveillance workflow, from sample collection and sequencing to bioinformatic analysis and phylogenetic inference, and highlights the transformative role of artificial intelligence (AI) in predictive surveillance. By analyzing global initiatives, operational barriers, and emerging technologies, this chapter underscores the necessity of sustainable, equitable, and interoperable genomic systems to proactively address current and future infectious disease threats.

Humans↗
PubMed2027

Systematic Dissection of Key Driver Perturbation Signatures in Single Cells via ECCITE-seq.

CRISPR screens, such as expanded CRISPR-compatible cellular indexing of transcriptomes and epitopes by sequencing (ECCITE-seq), enable the simultaneous measurement of transcriptomes, gRNA identity, and cell-surface protein expression at single-cell resolution to systematically interrogate gene function. This platform provides a powerful and scalable experimental approach for validating disease-associated regulators identified by large-scale association studies and other computational methods, including network-based analyses of multi-omics data. Here, as an example application, we describe an ECCITE-seq framework to characterize the transcriptomic consequences of perturbing multiple neuronal key driver genes associated with Alzheimer's disease (AD) in human-induced pluripotent stem cell (hiPSC)-derived neurons. More broadly, by integrating customized pooled gRNA libraries with different CRISPR effectors across multiple cell types, this approach allows for the assessment of the regulatory impact of candidate genes implicated in development and disease processes.

Humans↗
PubMed2027

Identification of Genome-Wide Chromatin Structural Aberration in Cancer by Hi-C Analysis.

Aberrant three-dimensional genome organization is a hallmark of cancer, often driving oncogene activation through mechanisms such as enhancer hijacking. High-throughput chromosome conformation capture (Hi-C) maps these interactions on a genome-wide scale. Unlike earlier dilution-based methods, in situ Hi-C performs proximity ligation within intact nuclei, minimizing random ligation noise and enabling fine-scale structure detection. This chapter describes an optimized in situ Hi-C protocol tailored for cancer cell lines using MboI digestion and biotin-mediated pull-down to generate high-complexity libraries. We further outline a computational workflow that extends beyond standard topological mapping of compartments and topologically associating domains to identify cancer-specific aberrations. Specifically, we focus on detecting chromosomal rearrangements (structural variants) and characterizing the distinct circular topology of extrachromosomal DNA. This integrated experimental and analytical framework provides the necessary tools to dissect the spatial dysregulation underlying tumor evolution.

Humans↗