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Transcriptome-wide association analysis of Alzheimer's disease: construction and clinical validation of transcriptomic risk scores.

Peng-Fei Zhang·Zhongqian Juan·Jialin Han·Yue Wang·Tianshu Zhu·Deyun Pang·Xin Zheng·Zhiming Lu
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Abstract

Early identification of individuals at high risk for Alzheimer's disease (AD) is crucial for disease prevention and intervention. This study aims to develop AD-specific transcriptomic risk scores (TRSs) through multi-tissue transcriptome-wide association study (TWAS) and to evaluate its clinical utility in AD diagnosis and risk prediction. Using GWAS summary statistics combined with expression quantitative trait loci (eQTL) data from 14 tissues, a multi-tissue TWAS approach was applied to identify AD-associated genes. Peripheral blood RNA expression data from the ADNI and GEO databases were used to construct the AD-specific TRSs. The associations of TRSs with AD pathological features and cognitive function were assessed in two independent cohorts. Furthermore, the diagnostic performance, differential diagnostic capability, and risk prediction efficiency of TRSs were evaluated. The TWAS identified 131 genes significantly associated with AD. The TRSs were significantly elevated in patients with AD and mild cognitive impairment (MCI) compared to cognitively normal (CN) individuals, and showed significant correlations with AD pathological markers and cognitive performance. When combined with APOE4 status, the TRSs demonstrated robust diagnostic ability for AD and MCI. When combined with age, the TRSs showed good diagnostic performance in distinguishing AD from frontotemporal dementia (FTD) (AUC = 0.86). Additionally, the TRSs effectively predicted the risk of progression to AD in non-AD individuals (HR = 1.74). The AD-specific TRSs developed in this study shows promising clinical utility in AD diagnosis, differential diagnosis, and risk prediction, providing valuable translational medical evidence for early screening and precision prevention of Alzheimer's disease.

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HumansAlzheimer DiseaseFemaleCognitive DysfunctionGenome-Wide Association StudyMaleTranscriptomeAgedGenetic Risk ScoreGenetic Predisposition to DiseaseAged, 80 and overAlzheimer’s diseaseEarly diagnosisRisk predictionTranscriptome-wide association studyTranscriptomic risk scoresJournal ArticleValidation Study

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Peng-Fei Zhang, Zhongqian Juan, Jialin Han, Yue Wang, Tianshu Zhu, Deyun Pang, Xin Zheng, Zhiming Lu. 2026-08-17. Transcriptome-wide association analysis of Alzheimer's disease: construction and clinical validation of transcriptomic risk scores.. https://doi.org/10.1007/s00406-026-02338-3

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