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Transmission dynamics and driving mechanisms of antibiotic resistance genes through a chronosequence of saline-sodic rice cultivation.

Yunshan Meng·Panpan Gao·Haoge Liang·Zhe Wei·Xueqin Ren·Hong Pan·Haojie Feng·Shuwen Hu
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Abstract

Rice cultivation reclaims saline-sodic soils and improves fertility, but may also promote antibiotic resistance genes (ARGs) accumulation and horizontal transfer, posing ecological risks. This study investigated long-term co-evolution of soil properties, microbial communities, ARGs, and mobile genetic elements (MGEs) across a 1-78 year cultivation chronosequence in saline-sodic fields. Results indicated that prolonged cultivation effectively alleviated soil salinization and increased fertility. Microbial communities shifted directionally, with functional taxa enriched, while opportunistic pathogen-containing genera peaked during 5-20 years. ARGs abundance and diversity increased markedly after five years and peaked at 10-20 years. Multidrug efflux pump genes persisted throughout the chronosequence, whereas aminoglycoside resistance genes declined after 30 years. MGEs activity increased over time and was significantly correlated with key ARGs. Path analysis identified improved soil properties as the primary direct driver of ARGs accumulation, while cultivation-induced declines in microbial diversity indirectly promoted ARGs dissemination by weakening the community's suppression of MGEs-mediated horizontal transfer. Collectively, long-term rice cultivation not only ameliorated saline-sodic soils but also created a dynamic, stage-specific resistome, with the 5-20 year period representing a critical risk window for ARGs propagation. These findings highlight the need to integrate ARGs monitoring into soil health assessments for sustainable management of reclaimed saline-sodic lands.

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OryzaSoil MicrobiologyDrug Resistance, MicrobialSoilGenes, BacterialGene Transfer, HorizontalSalinityAgricultureAntibiotic resistance genes (ARGs)Microbial communityRice cultivationSaline-sodic soilsJournal Article

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Yunshan Meng, Panpan Gao, Haoge Liang, Zhe Wei, Xueqin Ren, Hong Pan, Haojie Feng, Shuwen Hu. 2026-08-23. Transmission dynamics and driving mechanisms of antibiotic resistance genes through a chronosequence of saline-sodic rice cultivation.. https://doi.org/10.1016/j.jhazmat.2026.143380

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