PubMed · 6815465
The source did not provide an abstract. Follow the original record for more information.
Explore connections, maps & timelines
Centers for Disease Control (CDC). 1982-09-10. Cholera, 1981.. https://pubmed.ncbi.nlm.nih.gov/6815465/
Cite the original work for its findings. Save a collection to share your selection of sources.
KEEP EXPLORING
SUMMARY: Next Generation Sequencing is widely deployed in cholera-endemic regions, yet an end-to-end reproducible pipeline that unifies read QC, filtering, reference mapping, variant calling/annotation, recombination screening, and extraction of parsimony informative sites/variant codons, phylogenetic inference for downstream phylodynamic and epidemiological analyses have been lacking, slowing outbreak investigation and public health response. CholeraSeq is a high-throughput genomics pipeline for cholera genomic surveillance. It ingests consensus genomes, short read sequence data, draft assemblies, and scales seamlessly from local to cloud environments. To accelerate epidemiological context placement of new outbreak strains, we provide a curated ready-to-use core genome alignment compiled from public data, enabling flexible, fast, integration of new samples for outbreak investigations. AVAILABILITY AND IMPLEMENTATION: CholeraSeq is freely available on the GitHub platform https://github.com/CERI-KRISP/CholeraSeq. CholeraSeq is implemented in Nextflow with a modular design building upon the nf-core community standards.
19th.century Glasgow was an overcrowded city containing some of the worst housing conditions in the UK. Conditions were ripe for epidemics of infectious diseases and they came in waves causing high mortality particularly among the young. Diagnostic difficulties and ineffective therapy meant that little impact was made on these diseases during the first half of the period. Smallpox was the exception-vaccination of children reduced the incidence and mortality early in the century but subsequent public complacency caused it to return within a few years. Measles and whooping cough surpassed smallpox as the major causes of infectious disease mortality as early as 1810. Epidemics were less common after the three-quarter century mark due to improved living conditions for the poor but also as a result of the assiduos application of Public Health principles.
Explore the source record for details and available documents.