PubMed HealthSearch

PubMed · 8241395

Macromolecular diffusion in crowded solutions.

Abstract

The effects of crowding on the self or tracer diffusion of macromolecules in concentrated solutions is an important but difficult problem, for which, so far, there has been no rigorous treatment. Muramatsu and Minton suggested a simple model to calculate the diffusion coefficient of a hard sphere among other hard spheres. In this treatment, scaled particle theory is used to evaluate the probability that the target volume for a step in a random walk is free of any macromolecules. We have improved this approach by using a more appropriate target volume which also allows the calculation to be extended to the diffusion of a hard sphere among hard spherocylinders. We conclude that, to the extent that proteins can be approximated as hard particles, the hindrance of globular proteins by other proteins is reduced when the background proteins aggregate (the more so the greater the decrease in particle surface area), the hindrance due to rod-shaped background particles is reduced slightly if the rod-like particles are aligned, and the anisotropy of the diffusion of soluble proteins among cytoskeletal proteins will normally be small.

Explore related subjects

Keep this discovery

Explore connections, maps & timelines

BibTeXRIS

J Han, J Herzfeld. 1993. Macromolecular diffusion in crowded solutions.. https://doi.org/10.1016/s0006-3495(93)81145-7

Cite the original work for its findings. Save a collection to share your selection of sources.

KEEP EXPLORING

Related citations

Lipid domains and orthorhombic phases in model stratum corneum: evidence from Fourier transform infrared spectroscopy studies.

A three component model for the lipid barrier of the stratum corneum (SC) consisting of ceramide III, cholesterol, and perdeuterated palmitic acid, has been characterized by Fourier transform infrared spectroscopy. At physiological temperature the CD2 scissoring mode of the palmitic acid methylenes, and the CH2 rocking mode of the ceramide methylenes, are each split into two components. This indicates that both components exist in separate, conformationally ordered phases, probably with orthorhombic perpendicular subcells. The magnitude of the splitting indicates that the domains are at least 100 chains in size. The thermotropic behavior of the CD2 stretching vibrations demonstrates that conformational disordering of the palmitic acid commences at 42 degrees C with a transition midpoint of 50 degrees C. The CH2 stretching frequency indicates the ceramide chains remain ordered until 50 degrees C then disorder with a midpoint of 67 degrees C. The results provide a molecular characterization for the complex low temperature (10-40 degrees C) dynamic behavior suggested by recent 2H NMR experiments.

Biophysical Phenomena

Biophysical studies of lipopeptide-membrane interactions.

There are a number of naturally occurring motifs for lipidation of peptides and proteins. In cases in which this involves adding a single hydrocarbon chain to the peptide, it is either a fatty acid or an isoprenyl group. Lipopeptides will partition between membrane and aqueous phases. When only one hydrocarbon chain is attached to the peptide, the affinity of the lipopeptide for the membrane is only marginally increased over that of the free peptide. The resulting partitioning is largely determined by the extent of the interaction of the peptide moiety with the membrane. In contrast, lipidation involving two hydrocarbon chains, either as two single chains attached at distinct locations of the peptide or a double-chain lipid anchor, firmly attaches the lipopeptide to the membrane. This can allow the placement of specific binding sites on a membrane surface. Such a strategy can be used, for example, to place specific antibodies on the surface of drug-carrying liposomes for the purpose of targeting drug delivery. In addition, lipopeptides will alter the physical properties of membranes. One of these effects is to increase the bilayer to hexagonal phase transition temperature. Substances having this property may also alter functional properties of membranes. While it is unlikely that these changes in the biophysical properties of the membranes. While it is unlikely that these changes in the biophysical properties of the membrane are responsible for specific functions of lipopeptides, such changes may be used to modulate certain properties of a membrane, such as the rate of viral fusion.

Biophysical Phenomena

Prediction of surfactant dysfunction in term infants by the click test.

Pulmonary surfactant dysfunction (inactivation, deficiency) has been implicated in term neonates with respiratory failure. This study has evaluated the click test, a biophysical test for surfactant function, which will be useful in rapidly and reliably identifying term neonates with surfactant dysfunction. Samples of tracheal and or gastric aspirates (0.2 ml) from 55 neonates, varying from 36 to 42 weeks of gestational age, with respiratory distress and fractional inspired oxygen concentration requirements of > 0.5 were shaken with 95% ethanol. Once bubbles formed the samples were examined in air-free water under a microscope. In a positive click test, the bubbles rhythmically increase and then decrease in size, denoting the presence of active surfactant. When few bubbles were observed, the specimen was labelled as equivocal, and if none were seen, it was called negative. Surfactant dysfunction (negative or equivocal test) was consistently seen in respiratory distress syndrome (RDS), transient tachypnea of the newborn, and severe meconium aspiration syndrome (MAS). Preliminary data suggest that the click test will provide a rapid and early diagnosis of surfactant dysfunction in term neonates. This should facilitate early treatment with exogenous surfactant in RDS, by early diagnosis of surfactant deficiency, and provide justification for immediate and ongoing surfactant treatment in newborns with MAS. The click test can provide a diagnostic tool for surfactant dysfunction and deficiency in randomized controlled trials of therapy in those disease states in which exogenous surfactant therapy may be useful.

Biophysical Phenomena