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A computer aided system for systematic production and revision of sequence patterns.

H Ripoche·J Sallantin
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Abstract

We used two complementary fields, object-oriented databases and machine learning, to produce and revise a set of protein sequence patterns. In a first stage, we show that object-oriented query languages are well suited for the production of patterns as well as for the interpretation of the biological function of new (uncharacterized) sequences. In a second stage, a classification is built from the set of sequences according to the pattern matches. This classification may be criticized by a specific analysis method, which yields back to revise sequences and patterns. In our application, we have used concept lattices as a classification method and sequence multiple alignment for criticism.

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AlgorithmsAmino Acid SequencePattern Recognition, AutomatedPhylogenySequence AlignmentSequence AnalysisSequence Homology, Amino AcidSoftwareJournal Article

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BibTeXRIS

H Ripoche, J Sallantin. 1996. A computer aided system for systematic production and revision of sequence patterns.. https://doi.org/10.1016/0300-9084(96)84769-9

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