Neural network method to analyze data compression in DNA and RNA sequences.

T Alvager; G Graham; D Hutchison; J Westgard

doi:10.1021/ci960119k

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PubMed · 9090855

Neural network method to analyze data compression in DNA and RNA sequences.

T Alvager·G Graham·D Hutchison·J Westgard

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Abstract

Neural network computations on RNA sequences are used to demonstrate that data compression is possible in these sequences. The result implies that a certain discrimination should be achievable between structured vs random regions. The technique is illustrated by computing the compressibility of short RNA sequences such as tRNA. The method should be valuable in measuring the information content of DNA, including noncoding DNA, which has been shown to display certain properties resembling natural language attributes.

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Base Sequence Data Interpretation, Statistical Humans Neural Networks, Computer RNA Sequence Analysis, DNA Sequence Analysis, RNA Journal Article

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T Alvager, G Graham, D Hutchison, J Westgard. Neural network method to analyze data compression in DNA and RNA sequences.. https://doi.org/10.1021/ci960119k

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