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PubMed · 9789099

Mapplet: a CORBA-based genome map viewer.

K Jungfer·P Rodriguez-Tomé
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Abstract

MOTIVATION: There are a large number of genetic and physical maps, distributed at many sites. Each site offers different kinds of access methods and viewers. CORBA, the de facto standard for distributed object-oriented computing, offers new opportunities to unify the view on these maps through standard interfaces. A collaboration of Infobiogen and the EBI proposes a common IDL for maps. RESULTS: A CORBA map viewer is presented which serves as a proof of concept for the proposed IDL. It demonstrates its usefulness in the context of map viewing and its ability to handle large maps with <1000 markers. The viewer gives access to the maps of the Radiation Hybrid Database at EBI. It gives a quick overview of several large maps side by side. The marker density at each map position is displayed and different marker types can be highlighted. AVAILABILITY: Demonstration and source code at: http://sunny.ebi.ac.uk/ approximately jungfer/Mapplet CONTACT: jungfer@ebi.ac.uk

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Chromosome MappingGenomeInformation Storage and RetrievalInternetSoftwareJournal ArticleResearch Support, Non-U.S. Gov't

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K Jungfer, P Rodriguez-Tomé. 1998. Mapplet: a CORBA-based genome map viewer.. https://doi.org/10.1093/bioinformatics%2F14.8.734

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