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At least 199 records · Page 11Linked to original sources

PubMed2004

Evidence of substituent-induced electronic interplay. Effect of the remote aromatic ring substituent of phenyl benzoates on the sensitivity of the carbonyl unit to electronic effects of phenyl or benzoyl ring substituents.

Carbonyl carbon (13)C NMR chemical shifts delta(C)(C[double bond]O) measured in this work for a wide set of substituted phenyl benzoates p-Y-C(6)H(4)CO(2)C(6)H(4)-p-X (X = NO(2), CN, Cl, Br, H, Me, or MeO; Y = NO(2), Cl, H, Me, MeO, or NMe(2) ) have been used as a tool to study substituent effects on the carbonyl unit. The goal of the work was to study the cross-interaction between X and Y in that respect. Both the phenyl substituents X and the benzoyl substituents Y have a reverse effect on delta(C)(C[double bond]O). Electron-withdrawing substituents cause shielding while electron-donating ones have an opposite influence, with both inductive and resonance effects being significant. The presence of cross-interaction between X and Y could be clearly verified. Electronic effects of the remote aromatic ring substituents systematically modify the sensitivity of the C[double bond]O group to the electronic effects of the phenyl or benzoyl ring substituents. Electron-withdrawing substituents in one ring decrease the sensitivity of delta(C)(C[double bond]O) to the substitution of another ring, while electron-donating substituents inversely affect the sensitivity. It is suggested that the results can be explained by substituent-sensitive balance of the contributions of different resonance structures (electron delocalization, Scheme 1).

Journal Article↗

PubMed2005

An evolved explanation for the molecular geometry and electronic structure of diphenyl-substituted cyclic trimethylenemethane in the ground state: a nearly planar conformation with a considerably localized electronic state.

[structures: see text] We reinvestigated the molecular geometry and electronic structure of the diphenyl-substituted, five-membered cyclic trimethylenemethane (TMM) diradical (Berson's TMM, 3**) using UV/VIS absorption and emission spectroscopy combined with density functional theory (DFT) and time-dependent (TD)-DFT calculations. Two intense absorption bands, A and B, with lambda(ab) at 298 and 328 nm, respectively, a weak absorption band C, with lambda(ab) at 472 nm, and an intense emission band D, with lambda(em) at 491 nm, were observed for 3**. By comparing the spectrum of 3** with those of the 1,1-diphenylethyl (7*) and cyclopent-2-en-1-yl (9*) radicals, it was found that bands B, C, and D originated from the diphenylmethyl radical moiety (subunit I), while band A should most likely be assigned to an electronic transition related to an interaction between subunit I and residual subunit II, the cyclopentenyl radical moiety. An UB3LYP/cc-pVDZ calculation indicated that, in the ground state, the two unpaired electrons of 3** are mainly localized in subunits I and II, respectively, and the interaction between them is inefficient, despite the nearly planar conformation (theta = +23.5 degrees). Furthermore, a TD-UB3LYP/cc-pVDZ calculation suggested that absorption band A is assigned to an electronic transition involved with enhancement of the electron density of the C-2-C-3 bond. Substituent effects on the absorption and emission spectra of 3** using 11** and 13** support the conclusion based on the experiments and calculations. Therefore, we propose an evolved explanation for the molecular geometry and electronic structure of the ground state of 3** in a low-temperature matrix, a nearly planar conformation with a considerably localized electronic state, which alone accounts for the spectroscopic characteristics.

Journal Article↗

PubMed2005

Comparison of the electron localization function and deformation electron density maps for selected earth materials.

The electron localization function (ELF) and experimental and theoretical deformation electron density maps are compared for several earth materials and one representative molecule. The number and arrangement of the localized one-electron probability density domains generated in a mapping of the ELF correspond to the number and arrangement of the localized electron density domains generated in a mapping of the deformation electron density distribution, a correspondence that suggests that the two fields are homeomorphically related. As a homeomorphic relationship has been established previously between the Laplacian of the electron density distribution and the ELF, the relationship suggests that the deformation electron density distribution is also homeomorphically related to the Laplacian of the distribution.

Journal Article↗

PubMed2004

Electron pair localization function: a practical tool to visualize electron localization in molecules from quantum Monte Carlo data.

In this work we introduce an electron localization function describing the pairing of electrons in a molecular system. This function, called "electron pair localization function," is constructed to be particularly simple to evaluate within a quantum Monte Carlo framework. Two major advantages of this function are the following: (i) the simplicity and generality of its definition; and (ii) the possibility of calculating it with quantum Monte Carlo at various levels of accuracy (Hartree-Fock, multiconfigurational wave functions, valence bond, density functional theory, variational Monte Carlo with explicitly correlated trial wave functions, fixed-node diffusion Monte Carlo, etc). A number of applications of the electron pair localization function to simple atomic and molecular systems are presented and systematic comparisons with the more standard electron localization function of Becke and Edgecombe are done. Results illustrate that the electron pair localization function is a simple and practical tool for visualizing electronic localization in molecular systems.

Journal Article↗

PubMed2005

Interfacial electron dynamics and hot-electron-driven surface photochemistry of carbon tetrachloride on Ag(111).

We used time-resolved two-photon photoemission (2PPE) spectroscopy to investigate the photochemical behavior, the interfacial electronic structure, and the fate of photogenerated hot electron for carbon tetrachloride adsorbed on Ag(111). The photodissociation cross section was determined over a wide range of photon energy from 1.62 to 5.69 eV, which suggested a low-lying electron affinity level of adsorbed CCl4. A CCl4-derived unoccupied state located at 3.41 eV above the Fermi level was attributed to an image potential (IP) state based on its binding energy and effective mass. Polarization dependence of the 2PPE signal revealed that the IP state was populated by an indirect excitation process involving scattering of photoexcited hot electrons rather than direct electronic transition from a bulk band. The lifetime of the IP state was much shorter on the CCl4-covered Ag(111) surface than on the clean one, implying that the electron in the IP state is scavenged effectively by CCl4, probably through dissociative attachment to it. These results are significant in the sense that they provide dynamical evidence for a new relaxation pathway of the IP state in addition to the more common pathway involving back transfer of electron to the substrate.

Journal Article↗

PubMed2002

Generalized theory and simulation of spontaneous and super-radiant emissions in electron devices and free-electron lasers.

A unified formulation of spontaneous (shot-noise) and super-radiant emissions in electron devices is presented. We consider an electron beam with an arbitrary temporal current modulation propagating through the interaction region of the electronic device. The total electromagnetic field is presented as a stochastic process and expanded in terms of transverse eigenmodes of the medium (free space or waveguide), in which the field is excited and propagates. Using the waveguide excitation equations, formulated in the frequency domain, an analytical expression for the power spectral density of the electromagnetic radiation is derived. The spectrum of the excited radiation is shown to be composed of two terms, which are the spontaneous and super-radiant emissions. For a continuous, unmodulated beam, the shot noise produces only incoherent spontaneous emission of a power proportional to the flux eI(0) (DC current) of the particles in the electron beam. When the beam is modulated or prebunched, a partially coherent super-radiant emission is also produced with power proportional to the current spectrum /I(omega)/(2). Based on a three-dimensional model, a numerical particle simulation code was developed. A set of coupled-mode excitation equations in the frequency domain are solved self-consistently with the equations of particles motion. The simulation considers random distributions of density and energy in the electron beam and takes into account the statistical and spectral features of the excited radiation. At present, the code can simulate free-electron lasers (FELs) operation in various modes: spontaneous and self-amplified spontaneous emission, super-radiance and stimulated emission, in the linear and nonlinear Compton or Raman regimes. We employed the code to demonstrate spontaneous and super-radiant emission excited when a prebunched electron beam passes through a wiggler of an FEL.

Journal Article↗

PubMed2000

Nonlinear voltage dependence of the shot noise in mesoscopic degenerate conductors with strong electron-electron scattering.

It is shown that measurements of zero-frequency shot noise can provide information on electron-electron interaction, because the strong interaction results in the nonlinear voltage dependence of the shot noise in metallic wires. This is due to the fact that the Wiedemann-Franz law is no longer valid in the case of considerable electron-electron interaction. The deviations from this law increase the noise power and make it strongly dependent on the ratio of electron-electron and electron-impurity scattering rates.

Journal Article↗

PubMed2004

Intramolecular electron scattering and electron transfer following autoionization in dissociating molecules.

Resonant Auger decay of core-excited molecules during ultrafast dissociation leads to a Doppler shift of the emitted electrons depending on the direction of the electron emission relative to the dissociation axis. We have investigated this process by angle-resolved electron-fragment ion coincidence spectroscopy. Electron energy spectra for selected emission angles for the electron relative to the molecular axis reveal the occurrence of intermolecular electron scattering and electron transfer following the primary emission. These processes amount to approximately 25% of the resonant atomic Auger intensity emitted in the studied transition.

Journal Article↗

PubMed2006

Measurement of the electronic Grüneisen constant using femtosecond electron diffraction.

We report the first accurate measurement of the electronic Grüneisen constant gamma(e) using a novel method employing the new technique of femtosecond electron diffraction. The contributions of the conduction electrons and the lattice to thermal expansion are differentiated in the time domain through transiently heating the electronic temperature well above that of the lattice with femtosecond optical pulses. By directly probing the associated thermal expansion dynamics in real time using femtosecond electron diffraction, we are able to separate the contributions of hot electrons from that of lattice heating, and make an accurate measurement of gamma(e) of aluminum at room temperature. This new approach opens the possibility of distinguishing electronic from magnetic contributions to thermal expansion in magnetic materials at low temperature.

Journal Article↗

PubMed2000

Driving force and electronic coupling effects on photoinduced electron transfer in a fullerene-based molecular triad

Tuning thermodynamic driving force and electronic coupling through structural modifications of a carotene (C) porphyrin (P) fullerene (C60) molecular triad has permitted control of five electron and energy transfer rate constants and two excited state lifetimes in order to prepare a high-energy charge-separated state by photoinduced electron transfer with a quantum yield of essentially unity (> or = 96%). Excitation of the porphyrin moiety of C-P-C60 is followed by a combination of photoinduced electron transfer to give C-P(.+)-C60.- and singlet-singlet energy transfer to yield C-P-1C60. The fullerene excited state accepts an electron from the porphyrin to also generate C-P(.+)-C60.-. Overall, this initial state is formed with a quantum yield of 0.97. Charge shift from the carotenoid to yield C(.+)-P-C60.- is at least 60 times faster than recombination of C-P(.+)-C60.-, leading to the overall quantum yield near unity for the final state. Formation of a similar charge-separate species from the zinc analog of the triad with a yield of 40% is also observed. Charge recombination of C(.+)-P-C60.- in 2-methyltetrahydrofuran yields the carotenoid triplet state, rather than the ground state. Comparison of the results for this triad with those for related triads with different structural features provides information concerning the effects of driving force and electronic coupling on each of the electron transfer steps.

Journal Article↗

PubMed2002

Electron and immuno-electron microscopy of abdominal fat identifies and characterizes amyloid fibrils in suspected cardiac amyloidosis.

We evaluated the role of electron microscopy and immuno-electron microscopy studies on abdominal fat fine-needle biopsy samples in diagnosis and characterization of cardiac amyloidosis. The series consists of 15 patients with echocardiographic evidence of "restrictive cardiomyopathy" suspected to be due to amyloidosis. Patients underwent: clinical examination, electrocardiography, 2-D and Doppler echocardiography, immunofixation of serum and urine for detection of monoclonal immunoglobulins, and abdominalfat biopsies that were investigated with polarized light (Congo red), electron and immuno-electron microscopy using specific antibodies to kappa and lambda light chains, apolipoprotein A1, serum amyloid A (SAA), and transthyretin (TTR). Ultrastructural study of abdominal fat samples identified amyloid deposits in 15/15 cases. Immuno-electron microscopy specifically stained amyloid fibrils with antibodies anti-lambda (n = 8), -kappa (n = 2), -apolipoprotein A1 (n = 2) and -TTR (n = 3). Immuno-electron microscopy revealed TTR immuno-labelling in 2 patients with accidental monoclonal components, and a A reaction in I patient without monoclonal components. TTR and apolipoprotein A1 positive cases carried missense mutations in the corresponding genes. Our results demonstrate that amyloid deposits are present in the abdominalfat of patients suspected to have cardiac amyloidosis and that immuno-electron microscopy was able to characterize the amyloid protein in all cases.

Abdomen↗

PubMed1989

[Application of electron microscopy to tumor diagnosis--observation of 1000 cases with both light and electron microscopy].

We observed 1000 cases human tumors by electron microscope, as compared with by light microscope. Results were classified into four groups: First, the diagnosis by both light microscope and electron microscope were the same in 92 per cent of total cases. Second, diagnosis by light microscope was completely changed by the use of electron microscope, and the correct diagnosis was determined only by electron microscope in 4 percent when light microscope failed. Third, although major diagnosis of some tumors by both light and electron microscope was the same, by electron microscope, the diagnosis was extended and supplemented in 3 per cent. Finally, diagnosis was still unclear in 1 per cent. We think that ultrastructural evaluation contributes to diagnosis in 7 per cent of all the cases. Electron microscope plays a very important role in the differential diagnosis of tumors, especially, small cell malignant tumors, and pleomorphic malignant tumors, and also in determination of two-directional or multi-directional differentiation of some tumors.

Diagnosis, Differential↗

PubMedDate not supplied

Dynamic secondary electron contrast effects in liquid systems studied by environmental scanning electron microscopy.

We report an investigation into a dynamic contrast phenomenon in water-oil emulsions imaged in the environmental scanning electron microscope. Secondary electron contrast between oil and water phases is shown to change with scan rate, even inverting in extreme cases. This effect is attributed to the fact that charge carriers in liquids have intermediate mobilities compared with those in metallic conductors and solid insulators. Thus, increasing the electron energy flux density (via slower scan rates) results in the temporary accumulation of excess charge, which in turn gives rise to increased secondary electron emission. Excess charge dissipates between frames, however, such that classical charging of the specimen is not observed. The oils used here have conductivities lower than that of water, making them more susceptible to the effect. However, the material within the primary electron interaction volume is a conductive medium. We demonstrate that charging effects are not seen in regions of the oil where the interaction volume is in contact with the more conductive continuous water phase. Secondary electron emission from these regions therefore approximates to the intrinsic yield.

Electric Conductivity↗

PubMed1986

The use of backscattered electrons in analytical electron microscopy for the measurement of the mass of individual rat blood platelets.

The backscattered electron signal, generated in individual cells, has been used to measure the dry mass of these cells. Absolute mass values were obtained by comparing the backscattered electron signals of cells to the signals of polystyrene-latex spheres of known mass. The technique was carried out in an automated analytical scanning transmission electron microscope and applied to rat blood platelets. The resulting mass distributions agreed well with the distribution measured with a method that uses the transmitted electron signal by means of densitometric analysis of electrographs. Also the range of masses was in agreement with values deduced from data in the literature. The fully automated technique has the advantage that it is direct, fast, and that thicker specimens can be measured than is possible using the transmitted electron signal. The method is intended for use in combination with quantitative electron probe X-ray microanalysis and is then able to produce elemental mass fractions of biological specimens at the subcellular level.

Animals↗

PubMed1987

The mechanism of electron gating in proton pumping cytochrome c oxidase: the effect of pH and temperature on internal electron transfer.

Electron-transfer reactions following flash photolysis of the mixed-valence cytochrome oxidase-CO complex have been measured at 445, 598 and 830 nm between pH 5.2 and 9.0 in the temperature range of 0-25 degrees C. There is a rapid electron transfer from the cytochrome a3-CuB pair to CuA (time constant: 14200 s-1), which is followed by a slower electron transfer to cytochrome a. Both the rate and the amplitude of the rapid phase are independent of pH, and the rate in the direction from CuA to cytochrome a3-CuB is practically independent of temperature. The second phase depends strongly on pH due to the titration of an acid-base group with pKa = 7.6. The equilibrium at pH 7.4 corresponds to reduction potentials of 225 and 345 mV for cytochrome a and a3, respectively, from which it is concluded that the enzyme is in a different conformation compared to the fully oxidized form. The results have been used to suggest a series of reaction steps in a cycle of the oxidase as a proton pump. Application of the electron-transfer theory to the temperature-dependence data suggests a mechanism for electron gating in the pump. Reduction of both cytochrome a and CuA leads to a conformational change, which changes the structure of cytochrome a3-CuB in such a way that the reorganizational barrier for electron transfer is removed and the driving force is increased.

Carbon Monoxide↗

PubMed1992

Insect crossbridges, relaxed by spin-labeled nucleotide, show well-ordered 90 degrees state by X-ray diffraction and electron microscopy, but spectra of electron paramagnetic resonance probes report disorder.

The structure of glycerinated Lethocerus insect flight muscle fibers, relaxed by spin-labeled ATP and vanadate (Vi), was examined using X-ray diffraction, electron microscopy and electron paramagnetic resonance (e.p.r.) spectra. We obtained excellent relaxation of MgATP quality as determined by mechanical criteria, using vanadate trapping of 2' spin-labeled 3' deoxyATP at 3 degree C. In rigor fibers, when the diphosphate analog is bound in the absence of Vi, the probes on myosin heads are well-ordered, in agreement with electron microscopic and X-ray patterns showing that myosin heads are ordered when attached strongly to actin. In relaxed muscle, however, e.p.r. spectra report orientational disorder of bound (Vi-trapped) spin-labeled nucleotide, while electron microscopic and X-ray patterns both show well-ordered bridges at a uniform 90 degrees angle to the filament axis. The spin-labeled nucleotide orientation is highly disordered, but not completely isotropic; the slight anisotropy observed in probe spectra is consistent with a shift of approximately 10% of probes from angles close to 0 degrees to angles close to 90 degrees. Measurements of probe mobility suggest that the interaction between probe and protein remains as tight in relaxed fibers as in rigor, and thus that the disorder in relaxed fibers arises from disorders of (or within) the protein and not from disorder of the probe relative to the protein. Fixation of the relaxed fibers with glutaraldehyde did not alter any aspect of the spectrum of the Vi-trapped analog, including the slight order observed, showing that the extensive inter- and intra-molecular cross-linking of the first step of sample preparation for electron microscopy had not altered relaxed crossbridge orientations. Two models that may reconcile the apparently disparate results obtained on relaxed fibers are presented: (1) a rigid myosin head could possess considerable disorder in the regular array about the thick filament; or (2) the nucleotide site could be on a disordered, probably distal, domain of myosin, while a more proximal region is well ordered on the thick filament backbone. Our findings suggest that when e.p.r. probes signal disorder of a local site or domain, this is complementary, not contradictory, to signals of general order. The e.p.r. spectra show that a portion of the myosin molecule can be disordered at the same time as the X-ray diffraction and electron microscopy show the bulk of myosin head mass to be uniformly oriented and regularly arrayed.

Animals↗

PubMed1994

Comparative study of reaction centers from photosynthetic purple bacteria: electron paramagnetic resonance and electron nuclear double resonance spectroscopy.

Reaction centers (RCs) from four species of purple bacteria, Rhodobacter sphaeroides, Rhodobacter capsulatus, Rhodospirillum rubrum, and the recently discovered bacterium Rhodospirillum centenum, have been characterized by optical spectroscopy [Wang, S., Lin, X., Woodbury, N. W., & Allen, J. P. (1994) Photosynth. Res. (submitted for publication)] and magnetic resonance spectroscopy. All RCs contain a bacteriochlorophyll (BChl) a dimer as the primary donor. For Rb. sphaeroides and Rs. rubrum the donor QY optical band is at approximately 865 nm, compared to approximately 850 nm for Rb. capsulatus and Rs. centenum. The primary donor in the RCs can be converted between these two forms by the addition or removal of charged detergents. The electronic structure of the cation radical of the primary electron donor P+. was investigated in these species using electron paramagnetic resonance (EPR), electron nuclear double resonance (ENDOR), and electron nuclear triple resonance (TRIPLE) spectroscopy. The EPR line widths of P+. vary significantly and the ENDOR and Special TRIPLE spectra reveal drastic differences in the spin density distribution of the dimer for the different species. Reaction centers from Rb. sphaeroides and Rs. rubrum have a slightly asymmetric spin density distribution over the two halves of the dimer. The respective ratios are 2:1 and 1.6:1 in favor of the L-half of the BChl a dimer. In contrast, the spectra of P+. in reaction centers from Rb. capsulatus and Rs. centenum show an almost complete localization of the unpaired electron on the L-half of the dimer (ratio approximately 5:1).(ABSTRACT TRUNCATED AT 250 WORDS)

Electron Spin Resonance Spectroscopy↗

PubMedDate not supplied

Electronic coupling effects on photoinduced electron transfer in carotene-porphyrin-fullerene triads detected by time-resolved EPR.

Photoinduced charge separation and recombination in a carotenoid-porphyrin-fullerene triad C-P-C60 (Bahr et al., 2000) have been followed by time-resolved electron paramagnetic resonance. The electron-transfer process has been characterized in a glass of 2-methyltetrahydrofuran and in the nematic phase of two uniaxial liquid crystals (E-7 and ZLI-1167). In all the different media, the molecular triad undergoes two-step photoinduced electron transfer, with the generation of a long-lived charge-separated state (C*+-P-C60*-), and charge recombination to the triplet state, localized in the carotene moiety, mimicking different aspects of the photosynthetic electron-transfer process. The magnetic interaction parameters have been evaluated by simulation of the spin-polarized radical pair spectrum. The weak exchange interaction parameter (J = +1.7 +/- 0.1 G) provides a direct measure of the dominant electronic coupling matrix element V between the C*+-P-C60*- radical pair state and the recombination triplet state 3C-P-C60. Comparison of the estimated values of V for this triad and a structurally related triad differing only in the porphyrin bridge (octaalkylporphyrin vs tetraarylporphyrin) explains in terms of an electronic coupling effect the approximately 6-fold variation of the recombination rate induced by the modification of the porphyrin bridge as derived by kinetic experiments (Bahr et al., 2000).

Algorithms↗